Dear All,
I have a BAM file that contains reads with different length.
Could you please tell me how can I filter only those reads that are longer/shorter than a given value and write it in a new BAM file?
I have checked existing forum topics, but I did not find any that could help me.
I also tried NGSutils, but it just does not work ( installation failed, the commands/programs i.e. bamutils are "not found").
Unfortunately I have no programming/bioinfo background. I'm just a biologist who have to do everything , So if it is possible please be a bit more detailed.
Thank you in advance,
I have a BAM file that contains reads with different length.
Could you please tell me how can I filter only those reads that are longer/shorter than a given value and write it in a new BAM file?
I have checked existing forum topics, but I did not find any that could help me.
I also tried NGSutils, but it just does not work ( installation failed, the commands/programs i.e. bamutils are "not found").
Unfortunately I have no programming/bioinfo background. I'm just a biologist who have to do everything , So if it is possible please be a bit more detailed.
Thank you in advance,
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