Hello!
I'm very new in the world of bioinformatics, and maybe my question is so simple.
I'm trying to run the python script for the oases_pipeline, but it always give the same error.
The command I use is:
$python oases_pipeline.py -m 21 -M 31 -o outputfolder -d "-fastq -short /Users/geldoc/Desktop/TranscriptomePrograms/velvet_1.2.07/SecondRun/OW_sequence.txt" -p " -cov_cutoff 5 -min_trans_lgth 100 "
And the error is:
Could not find Velvet
Make sure that it is properly installed on your path
After this, I tried to run velvet without the python script and it works..so I don't understand the error message.... (I checked that the version of oases and velvet are right)
Thank you very much for your help!!
I'm very new in the world of bioinformatics, and maybe my question is so simple.
I'm trying to run the python script for the oases_pipeline, but it always give the same error.
The command I use is:
$python oases_pipeline.py -m 21 -M 31 -o outputfolder -d "-fastq -short /Users/geldoc/Desktop/TranscriptomePrograms/velvet_1.2.07/SecondRun/OW_sequence.txt" -p " -cov_cutoff 5 -min_trans_lgth 100 "
And the error is:
Could not find Velvet
Make sure that it is properly installed on your path
After this, I tried to run velvet without the python script and it works..so I don't understand the error message.... (I checked that the version of oases and velvet are right)
Thank you very much for your help!!
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