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Old 05-20-2013, 07:50 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,080
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See if this works.

Code:
awk '/^track/{x="Track"++i".bed";}{print > x;}' your_bed_file
This should produce multiple files (one for each track) with names like "Track1.bed Track2.bed" etc. Modify the word highlighted in red to get corresponding file names.

Last edited by GenoMax; 05-20-2013 at 07:55 AM.
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