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Old 07-01-2013, 08:53 AM   #4
dariober
Senior Member
 
Location: Cambridge, UK

Join Date: May 2010
Posts: 311
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Quote:
Originally Posted by jazz View Post
I am getting a bizarre result from using the intersectbed from bedtools. The output bed file contains strange characters and not the chromosomal coordinates as I expected.
Any suggestions?
Can anyone explain if the samtools mpileup would help?

Thanks
Hi there,

It would help other people answering you if you post
- The command line you executed
- A sample (a few lines) of the output including errors and messages
- A sample of the input files

Dario
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