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Old 02-15-2010, 04:21 PM   #1
kmkocot
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Location: Alabama

Join Date: Jun 2009
Posts: 48
Default Script to remove gap-only sites from fasta alignment?

Hi all,

I am trying to find a script or a program that I can call in a pipeline that can remove gap-only sites in a multiple sequence alignment. Can you think of anything I can use? I'd also like to
delete the columns at either end of each alignment where there are only 2 or fewer sequences with non-gap characters if you can think of anything that can do that.

Thanks!
Kevin
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