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xinhaiping · 06-20-2011, 10:14 AM

Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?

06-20-2011, 10:14 AM	#1
xinhaiping Junior Member Location: urbana.IL Join Date: Jun 2011 Posts: 4	Index between genome and mRNA Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?