SEQanswers - View Single Post - Tophat2 --fusion-search: use -G/--GTF or not?

turnersd · 12-10-2012, 01:28 PM

I'm using tophat2 --fusion-search and wondering what the effect might be of supplying a gene annotation with the -G/--GTF option versus not using that option. Thoughts anyone?

12-10-2012, 01:28 PM	#1
turnersd Senior Member Location: Charlottesville, VA Join Date: May 2011 Posts: 112	Tophat2 --fusion-search: use -G/--GTF or not? I'm using tophat2 --fusion-search and wondering what the effect might be of supplying a gene annotation with the -G/--GTF option versus not using that option. Thoughts anyone?