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Old 07-01-2013, 02:16 AM   #1
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Location: Spain

Join Date: Jun 2013
Posts: 5
Default Repeats in ChIPSeq reads

I would like to know if there is an enrichement in repeats in my ChIP-Seq data. I would like to have an histogram of the class of repeats enriched in my ChIP data.
I have downloaded the Repbase but, do I have to align all my reads again to the RepBase? Allowing multiple positions or not? There's any straigth forward way to do so?

Thans in advance,
AndreaIzq is offline   Reply With Quote