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Old 06-02-2014, 04:45 AM   #55
Thias
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Location: Münster, Germany

Join Date: Mar 2013
Posts: 42
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@GenoMax: Thanks for your answer, but unfortunately this can't be the problem.

The folder in ref points to an empty directory, because I do not want to include the shRNA sequences to my regular set of indexed genomes. However the syntax with ref= and path= is exactly the syntax I used to successfully index the eukaryotic genomes before. (I used the standard k-mer size 13 and a midpad size of 200000 for the genomes though).
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