Thread: Velvet usage
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Old 06-03-2016, 10:16 AM   #2
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707

Velvet is probably not the best assembler to use for assembling assorted junk in RNA-seq, which will probably have very high coverage variability. You might try Spades or Tadpole, both of which are much more tolerant of strange input, and don't need fixed coverage settings.
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