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Old 09-15-2014, 12:12 PM   #2
microgirl123
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Location: New England

Join Date: Jun 2012
Posts: 200
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In my opinion, the 16s metagenomics app from Illumina is good for a quick first look at your data. You need to do a LOT more work on it for publication. There are many options. MOTHUR has a MiSeq protocol that you could start with.

http://www.mothur.org/wiki/MiSeq_SOP
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