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Old 02-18-2013, 06:28 AM   #3
jdenvir
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Location: Huntington, WV USA

Join Date: Dec 2011
Posts: 6
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I ended up running Tophat2 over Bowtie 1; the latest version of each resolved the problems I was having with crashing. It would be nice to understand why Bowtie2 is prohibitively slow, though.
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