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Old 02-24-2016, 05:23 AM   #7
SylvainL
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Location: Geneva

Join Date: Feb 2012
Posts: 177
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I read quickly the paper you give the link to, Alex and I think it would be interesting to re-analyze their data with a pipeline adjusted for RNAseq, and a splicing aware mapper. They used bowtie and the package "affy". And they also used the RPKM counts, and it does not seem they did replicates... To me, it looks like they more or less did everything wrong there (not a RNAseq analysis pipeline)

Last edited by SylvainL; 02-24-2016 at 05:41 AM.
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