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Old 03-24-2016, 08:16 AM   #1
carolW
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Location: US

Join Date: Apr 2013
Posts: 103
Default extract clinical significant of a vcf variants from clinvar

how can I extract the clinical significant of variants of my vcf file from clinvar? Should I parse the clinvar xml file and match the variants of vcf with those in clinvar if they are annotated similarly or in the same way chr, pos,ref, allele?

Any info is welcome.

Carol
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