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Old 06-20-2010, 11:31 PM   #60
Simon Andrews
Location: Babraham Inst, Cambridge, UK

Join Date: May 2009
Posts: 871

Originally Posted by mard View Post
Thanks for the quick reply Simon.

The command I'm using is:

java -Xmx250m -classpath /Tools/FastQC/ sequence.fastq
and the sequence.fastq file I'm running it on is 2.9Gb (~17million 75bp reads)
Maybe it's the longer sequence length which is causing the problem. Can you try changing the -Xmx250m to -Xmx500m and see if that works.
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