Thanks for all of your advices!
I did not know about BBMap software, thank you!
Is it faster as Hisat2? I have billions of read to map, although I think I will try for now to restrict my mapping to the transcriptome (especially for Eukarotic genome) -- full genome is very slow.
I did not know about BBMap software, thank you!
Is it faster as Hisat2? I have billions of read to map, although I think I will try for now to restrict my mapping to the transcriptome (especially for Eukarotic genome) -- full genome is very slow.
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