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Old 03-28-2016, 11:22 PM   #5
Alphabets
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Location: SZ

Join Date: Mar 2016
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Quote:
Originally Posted by Richard Finney View Post
What is your goal?

What program is reporting the warning?

I want to call STRs with lobSTR dealing with the BAM file.

I run lobSTR with the paired-end BAM file and it occurs many warnings like that.

The BAM file I use is downloaded from web and I don't know more about it.

When I run lobSTR treating it as the single-end BAM file, there is no warnings.
The lobSTR to run single-end and single-end BAM file have different parameters.

So, any other suggestions? Thanks!

Last edited by Alphabets; 03-28-2016 at 11:27 PM.
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