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Old 03-21-2013, 09:43 AM   #3
Krish_143
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Location: Sweden

Join Date: Jan 2012
Posts: 45
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Incase if i do not have replicates,
1) I will run cufdiff for 2 samples (ctl,sample1)(ctl,sample2)... do it for all and then compare all together.
or
a) I will preffer cufflinks 1st step (all samples), so i will have fpkm value for all the genes to all the samples and then based on gene of interest using R i will analyze the data.

choose what you like.
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Krishna

Last edited by Krish_143; 03-21-2013 at 09:46 AM.
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