Tweet
Hello!!
I recently tried to run the evigene pipeline http://arthropods.eugenes.org/genes2...mbly_pipe.html.
I am working with a plant and I am working on a Cluster that uses SLURM. First I used Trinity and SOAPdenovo for transcriptome assembly. Once I had the assemblies I ran trformat.pl for each assembly file.
Afterwards I tried to run tr2aacds_qsub.sh but it does not work, it seems it fails right from the beginning.
I attach the script I used, the log file of the cluster, the log file of the evigene pipeline and the files I got.
I hope you can give it a look and point out what is the problem
Thanks
I recently tried to run the evigene pipeline http://arthropods.eugenes.org/genes2...mbly_pipe.html.
I am working with a plant and I am working on a Cluster that uses SLURM. First I used Trinity and SOAPdenovo for transcriptome assembly. Once I had the assemblies I ran trformat.pl for each assembly file.
Afterwards I tried to run tr2aacds_qsub.sh but it does not work, it seems it fails right from the beginning.
I attach the script I used, the log file of the cluster, the log file of the evigene pipeline and the files I got.
I hope you can give it a look and point out what is the problem
Thanks