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Old 06-02-2010, 08:20 AM   #3
albrown415
Junior Member
 
Location: Bay Area

Join Date: Jun 2010
Posts: 8
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You're right. This was a silly question. Most people map the reads at this point and choose an alignment program that outputs the data into the proper format. I'm working to get Bowtie running on my computer, which I believe should be able to input fastq and output SAM.
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