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Old 06-04-2010, 12:28 PM   #4
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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If you did want to convert the FASTQ to an unaligned SAM or BAM file, try this:
http://picard.sourceforge.net/comman...tml#FastqToSam
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