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Old 06-07-2017, 09:43 AM   #5
crh
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Location: tx

Join Date: Dec 2009
Posts: 46
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Here is what /env is set to:

charlesh@~/binf/src/bowtie2-2.3.2 => /usr/bin/env python --version
Python 2.7.6

PYTHONPATH
PYTHONPATH=/usr/lib/python3.4/:/usr/local/lib/python3.4/dist-packages:/home/charlesh/binf/lib:/home/charlesh/binf/bin/drive5_py/:/home/charlesh/binf/lib/drive5_py:/home/charlesh/binf/bin/galaxy_tools/:/home/charlesh/lib/:/home/charlesh/binf/src/biopython-1.61:/home/charlesh/binf/src/PyCogent-1.5.3:/home/charlesh/binf/src/RNASeqReadSimulator-master/src:/home/charlesh/binf/lib/uparse:/home/charlesh/binf/src/scikit-bio:/home/charlesh/binf/src/picrust:/home/charlesh/binf/src/hdf5-1.8.1

PATH:
PATH=/home/charlesh/binf/R/bin:/usr/bin:/bin::/home/charlesh/binf/lib:/usr/games:/usr/bin:/usr/sbin:/sbin:/usr/local/sbin:/usr/local/bin:/home/charlesh/binf/bin:/home/charlesh/binf/bin/galaxy_tools/:/home/charlesh/binf/bin/drive5_py/:/home/charlesh/bin:/home/charlesh/bin/x86_64:/home/charlesh/bin/x86_64:/home/charlesh/binf/lib:/home/charlesh/binf/bin:/home/charlesh/binf/src/blat_33:/home/charlesh/binf/src/clustalx1.82.linux:/usr/lib/phylip/bin:/home/charlesh/binf/lib/drive5:/home/charlesh/bin/misassembly_tools:/home/charlesh/binf/lib/drive5_py:/home/charlesh/binf/src/microbiomeutil-r20110519/ChimeraSlayer:/home/charlesh/binf/src/bedtools2-2.19.1/bin:/usr/lib/phylip/bin:/home/charlesh/bin/misassembly_tools:/home/charlesh/binf/src/PASA_r20130907/misc_utilities/:/home/charlesh/binf/src/PASA_r20130907/scripts:/home/charlesh/binf/src/ucsc/bin/:/home/charlesh/binf/src/bowtie2-2.3.2/:/home/charlesh/binf/src/tophat-2.0.13.Linux_x86_64/:/home/charlesh/binf/bin/drive5_py/:/usr/lib/qiime/bin/:/home/charlesh/binf/src/ncbi-blast-2.2.30+/bin:/home/charlesh/binf/src/TransDecoder/:/home/charlesh/binf/src/inparanoid_4.1:/home/charlesh/binf/src/Trimmomatic-0.36/:/seu/cs/home/user/c/charlesh/bin/misassembly_tools
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