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Old 12-11-2012, 05:23 PM   #9
TheRob
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Location: Memphis, Tn

Join Date: Feb 2010
Posts: 1
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Hi Amolkote,

It is rather unusual for an assembly program to accept SAM/BAM input but not FastQ. I suspect it accepts FastQ, but I don't have any experience with transAbyss. Anyways, the only tool i know that will do the job (short of an awk or perl script, which can be dangerous) was mentioned above by maubp: FastqToSam.

Why are you using transAbyss exactly?
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