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Old 01-30-2020, 06:47 AM   #1
Hedi86
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Location: Norway

Join Date: Oct 2017
Posts: 23
Default length of uniquely mapped seq in Bismark

Dear all

Bismark reports the number of allignments with a unique best hit, is there a way to know what was the Length of those unique sequences ? for instance I have an RRBS library which after trimming has seq length of 20 - 140 bp, this gave me about 40% unique mapping in Bismark, I would like to know the length of those fragments which mapped uniquely.

Best regards
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