Has anybody tried using CLCBio Genomics server for assembling large genomes (Panda, Human etc)?
We have interest in assembling large genomes with small amount of RAM. Tried using CLCBio server based on their claims, but we were not able to do de novo assembly of panda (from Li et al Nat Gen 2010) and Human (from SRA) reads generated on Illumina platform.
Our server configuration is 128 GB RAM and 2 Intel quad cores.
We ran the assembly (both contig generation and mapping) with all default parameters.
We would like to hear if anybody has had similar or maybe better experience.
We have interest in assembling large genomes with small amount of RAM. Tried using CLCBio server based on their claims, but we were not able to do de novo assembly of panda (from Li et al Nat Gen 2010) and Human (from SRA) reads generated on Illumina platform.
Our server configuration is 128 GB RAM and 2 Intel quad cores.
We ran the assembly (both contig generation and mapping) with all default parameters.
We would like to hear if anybody has had similar or maybe better experience.
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