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Old 01-15-2011, 04:27 AM   #3
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,541
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Quote:
Originally Posted by dawe View Post
Hooray for changes 1, 2, 3 and 7 :-)
d
+1

My only concern is that the read names in the FASTQ files will not include the /1 or /2 suffix. This means both the forward and reverse reads get the same identifier, with the number (1 or 2) in the read description (i.e. in the @ line but after a white space). There are nice symmetries with the SAM/BAM format. However, this will mean any existing scripts/tools/pipelines expecting the suffices will need changing.
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