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Old 06-08-2015, 05:05 AM   #3
mido1951
Senior Member
 
Location: Tunisia

Join Date: May 2014
Posts: 123
Default new PROBLEMS NaS

i installed gawd and I recompiled
there a new problems.

Code:
root@midox-VGN-NS11S-S:/home/midox/Bureau/NaS-master# $(pwd)/NaS_v2/NaS --fq1 /home/midox/Bureau/NaS_example_acineto/AWK_DOSF_1_1_A5KR6.IND3_clean.10prc.fastq --fq2 /home/midox/Bureau/NaS_example_acineto/AWK_DOSF_1_2_A5KR6.IND3_clean.10prc.fastq --nano /home/midox/Bureau/NaS_example_acineto/MinION_reads_Acinetobacter_baylyi.fa --out NaS_example --nb_proc 5
Number of parallel task : 5
[lundi 8 juin 2015, 14:56:09 (UTC+0200)] Create output directory : NaS_example
[lundi 8 juin 2015, 14:56:09 (UTC+0200)] Create fasta file from fastq...
[lundi 8 juin 2015, 14:58:16 (UTC+0200)] Alignement step in fast mode...
[lundi 8 juin 2015, 14:58:23 (UTC+0200)] Select reads...
[lundi 8 juin 2015, 14:58:23 (UTC+0200)] Retrieve similar reads...
[lundi 8 juin 2015, 14:58:24 (UTC+0200)] Generate NaS reads...
cat: NaS_example/assemblies/*/NaS_hqctg_reads_final.fa: No such file or directory
[lundi 8 juin 2015, 14:58:25 (UTC+0200)] Generate statistics...
fastalength: error while loading shared libraries: libglib-1.2.so.0: cannot open shared object file: No such file or directory
fastacomposition: error while loading shared libraries: libglib-1.2.so.0: cannot open shared object file: No such file or directory
awk: cmd. line:1: fatal: division by zero attempted
awk: cmd. line:1: fatal: division by zero attempted
gawk: cmd. line:1: fatal: division by zero attempted
fastalength: error while loading shared libraries: libglib-1.2.so.0: cannot open shared object file: No such file or directory
fastacomposition: error while loading shared libraries: libglib-1.2.so.0: cannot open shared object file: No such file or directory
awk: cmd. line:1: fatal: division by zero attempted
awk: cmd. line:1: fatal: division by zero attempted
gawk: cmd. line:1: fatal: division by zero attempted
NbReads=    CumulativeSize=    N50size=    minSize=    maxSize=    avgSize=    =>  NaS_example/NANO_reads.stats
NbReads=    CumulativeSize=    N50size=    minSize=    maxSize=    avgSize=    =>  NaS_example/NaS_hqctg_reads.stats
have any ideasa about this errors?
Thankyou
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