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Old 10-17-2012, 09:27 AM   #3
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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That would be pretty easy to do in a small perl/python/whatever script. There's also a pretty easy to use C api for samtools. I imagine you could also do that in a bash script, but I would personally find it simpler to just write a quick program.
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