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  • de novo assembler for se 36 bp illumina reads

    Hi,

    I am wondering if there is any de novo assembler that can work with 25x coverage 36 bp solexa reads. I saw that a few requires paired end reads to work with. Some others require longer reads. Can anyone suggest any software that can work with these reads,

    thank you,

  • #2
    de novo assembler for se 36 bp illumina reads

    Velvet should work.

    Comment


    • #3
      try minia... fast and memory efficient..

      Good luck..

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