Thread: mutations file
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Old 05-29-2015, 02:20 AM   #2
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,088

When you refer to "mutations file" I assume you are referring to SNP's? You can use samtools to call SNP (and INDEL's too). Here is a simple guide (skip to the "Basic Variant Calling" section):
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