I ran samtools (0.1.13) mpileup on a bam file and this error pops up. Anyone has any solution to this? I have never encounter this before.
Could this be a memory problem? library problem?
Could this be a memory problem? library problem?
Code:
Command: samtools mpileup -f /seq_db/Homo_sapiens/hg19/hg19.fa CC431_sorted.bam > CC431_sorted.pileup [mpileup] 1 samples in 1 input files <mpileup> Set max per-sample depth to 8000 *** glibc detected *** samtools: free(): invalid next size (fast): 0x000000001a281df0 *** ======= Backtrace: ========= /lib64/libc.so.6[0x3e9607230f] /lib64/libc.so.6(cfree+0x4b)[0x3e9607276b] samtools[0x42a55f] samtools[0x406d48] samtools[0x4285f7] samtools[0x42870c] samtools[0x4081f4] samtools[0x40946a] /lib64/libc.so.6(__libc_start_main+0xf4)[0x3e9601d994] samtools[0x402469]