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Old 01-24-2014, 09:31 AM   #2
rhall
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Location: San Francisco

Join Date: Aug 2012
Posts: 322
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Given that you have HGAP2 results, I'm guessing you have SMRT Analysis installed? If so you have all the components installed to run PacBioToCA. It is also available as a protocol in SMRT Portal, which is probably the easiest way to run. PacBioToCA (now PBcR) has been updated since the version included in SMRT Analysis and it is probably worth while using the new (8.1) version. Instructions for install:
http://sourceforge.net/projects/wgs-...mbler/wgs-8.1/
It is available as executables so is straightforward to install. It should then be possible to follow:
http://sourceforge.net/apps/mediawik...php?title=PBcR
You can find some test data:
http://www.cbcb.umd.edu/software/pbc...nal/index.html
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