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Old 04-11-2012, 07:56 AM   #1
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Location: Boston

Join Date: Nov 2010
Posts: 2
Default tophat2 segment_juncs error: Error: segment-based junction search failed with err =-6


I am trying out the latest tophat2 on a small read file. My reference is the rabbit genome which has 3243 sequences (chromosomes + scaffolds).

segment_juncs.log has the following lines at the end:

>> Performing segment-search:
Loading left segment hits...
Error: invalid 'B' array subtype (^)!

Has anyone had the same issue? How to fix it? Thanks a lot.

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