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Old 06-01-2012, 08:50 AM   #6
adaptivegenome
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Location: US

Join Date: Nov 2009
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Although the project officially goes live on Monday, June 4th, the code is available on github now.

The main code featuring multithreaded processing of BAM files is located here:
https://github.com/adaptivegenome/openge

Binaries are here:
https://github.com/adaptivegenome/openge/downloads


The preliminary release of a bpipe-compatible workflow system is located:
https://github.com/adaptivegenome/OGE-Workflows

The main code is based on bamtools and so for those that are familiar with samtools or bamtools, it should be easy to start using right away. Please feel free to submit comments/suggestions via the github site (under Issues) or discuss here in this forum. We would be grateful to hear of bugs or simply feedback on speed increases with different input data.

Last edited by adaptivegenome; 06-02-2012 at 04:33 AM.
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