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  • .cns File?

    I want to used cnvHMM but it requires a cns file. I am not sure what exactly a cns file is so if anyone has some knowledge, it would be appreciated.
    Last edited by dmacmillan; 01-11-2012, 09:26 AM.

  • #2
    readme fiel not clear

    Hi

    The cnvNMM READMe file is not clear. I could not figure out the format or type of cnsfile. Some idea?

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    • #3
      I think cns file is the consensus read depth file.
      Just came across samtools mpileup for Variant and SNP calls..

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      • #4
        thank you ganygan25

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        • #5
          Hi,

          I'm also trying to get this to work. Did samtools mpileup work? If so what did you try?

          Cheers

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