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Old 12-01-2015, 08:21 AM   #6
thomasblomquist
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Location: Ohio

Join Date: Jul 2012
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Interesting, I tried the combined PBcR MHAP pipeline with the oxford.spec and arrived at an assembly in 20 minutes with 98% match to the NCBI ref seq for Lambda.

The DALIGNER, POA and RunCA with the oxford.spec arrived at the assembly after 1.5 days with >99% match to the NCBI ref seq for Lambda.

The major difference seems to be the latter is more accurate in the homopolymer runs.

Still for rapid identification and other purposes, the PBcR MHAP pipeline is more than adequate.

-Tom
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