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Old 09-01-2013, 10:17 PM   #1
Location: NJ

Join Date: Aug 2011
Posts: 10
Default "not_aligment" from the output of HTseq-count

What's the meaning of "not_alignment" from the output of HTseq-count? The manual says it is the "reads in the Sam/Bam file without alignment". Does this mean the reads that are not mapped to the reference? or anything else? Thanks!
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