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Old 09-02-2013, 01:28 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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Yeah, these are just reads that didn't align. Whether the count for this is 0 or not will depend on the aligner that you're using (some don't put unaligned reads in the output SAM/BAM file, others do).
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