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Old 09-02-2013, 05:13 PM   #3
flyingoyster
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Location: NJ

Join Date: Aug 2011
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Assuming that the file I used for input of HTseq-count includes the unaligned reads in the output BAM file, But the number of "no_alignment" reads doesn't match the number of reads not mapped to the reference. Any idea about this? Thanks!
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