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Old 01-31-2018, 06:23 AM   #1
iltisanni
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Location: Mainz, Germany

Join Date: Mar 2017
Posts: 21
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Hello,

within the next months we want to start our own runs with the MinION.
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One question besides:
First I read that the reads are in hast5 format and have to be extracted with eg. poretools.
Then I read that the output data is in fastq format.
What output format is generated by MinION-sequencing?
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Anyway, what I'm really interested in is what Software-pipelines you guys use and what you can recommend for denovo Assembly, Alignment, (differential)gene-expression, snp/indel detection?


I already found this list: http://bioinformaticsonline.com/blog...-data-analysis
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