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Old 12-05-2012, 06:55 AM   #10
Senior Member
Location: germany

Join Date: Oct 2009
Posts: 140

I don't know yet.
Probably compare them, #mutations,distances
calculate the consensus,ancestor, plot the distances,
make my cloud-graphics(plot amino acid mutations over nucleotide mutations),
and mutation pictures(binary arrays,sequences over positions,pixel
at (x,y) iff x differs from consensus at position y) etc.

maybe this also works for "STR"s over normal mutations (these are new to me)

calculate recombination frequency
estimate mutation rates and what changes them
statistics of codon-usage
search for retrovirus

Last edited by gsgs; 12-05-2012 at 10:49 AM.
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