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Old 12-05-2012, 01:29 PM   #16
laura
Senior Member
 
Location: Cambridge UK

Join Date: Sep 2008
Posts: 151
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As far as chrY

http://ftp.1000genomes.ebi.ac.uk/vol...notypes.vcf.gz

http://ftp.1000genomes.ebi.ac.uk/vol...notypes.vcf.gz

We provide all our variation data in VCF format which serves our needs quite well, if you have a better idea for your own needs then you should be able to get all the info you need from these files to do the conversion

Look at http://www.1000genomes.org/faq/how-d...your-vcf-files for streaming if you want to avoid downloading the entire data set
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