Hi,
I am having some trouble getting my head around it today, its Monday.
Essentially, I have a design matrix like so:
Patient Condition
58 2
58 3
64 2
64 3
...
So, according the the vignette, I need to do ~Patient + Condition. I really want condition differences, NOT patient differences.
I can view the results via results(slim_dds_1, contrast=c("Condition","3","2")). How do I know what was a patient difference? I suppose I could do the reduced formula and compare?
I am having some trouble getting my head around it today, its Monday.
Essentially, I have a design matrix like so:
Patient Condition
58 2
58 3
64 2
64 3
...
So, according the the vignette, I need to do ~Patient + Condition. I really want condition differences, NOT patient differences.
I can view the results via results(slim_dds_1, contrast=c("Condition","3","2")). How do I know what was a patient difference? I suppose I could do the reduced formula and compare?
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