Quote:
Originally Posted by dpryan
Yeah, have a look at this thread on Biostars for some example commands. Allegedly, you can also use cmpfastq, which is a perl script, to do this too (I've never used this so I can't say that it works properly).
In the future, use a trimmer that handles both reads of a pair at once so you can avoid these issues.
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Thanks for your reply.I will look into it..