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jjk · 03-23-2010, 05:28 AM

Through artemis i got the ORF's and through Run > Pfam Search i get the correct name for the ORF. But how to do this for all my ORF's and automatically?

Found the readme.. (my bad)

Searching and Using Local Sequence Databases (Optional)

Will look into that

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Downloaded all the blast software and placed it in the package dir from Artemis.

But when i use the GUI in the mac environment, select the ORF's, Run fasta on selected future against %uniprot it gives me the login screen... I hoped i could make a link against the NCBI database but is this even possible cause i dont have any data myself because this is a "new" species we are working on

03-23-2010, 05:28 AM	#6
jjk Member Location: Brisbane Join Date: Nov 2009 Posts: 21	Through artemis i got the ORF's and through Run > Pfam Search i get the correct name for the ORF. But how to do this for all my ORF's and automatically? Found the readme.. (my bad) Searching and Using Local Sequence Databases (Optional) Will look into that ### Downloaded all the blast software and placed it in the package dir from Artemis. But when i use the GUI in the mac environment, select the ORF's, Run fasta on selected future against %uniprot it gives me the login screen... I hoped i could make a link against the NCBI database but is this even possible cause i dont have any data myself because this is a "new" species we are working on Last edited by jjk; 03-23-2010 at 09:17 PM. Reason: ###