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Old 09-12-2016, 09:53 AM   #1
bbm
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Location: North Carolina

Join Date: Sep 2011
Posts: 38
Default Bismark methylation extractor output

Hello all,

I used the extractor function to get CpG counts.


bismark_methylation_extractor -p --no_overlap --bedGraph --counts --buffer_size 10G --cytosine_report --genome_folder genome.fa filename_bismark_bt2_pe.bam -o

I expect one file from the output to show cytosine_report, but I'm not getting it.

Wonder which part I did wrong?

Thanks!

Regards,
bbm
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