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Old 03-02-2018, 07:25 AM   #6
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,083

If you know the barcode sequences then you could run bbduk in "match" mode and require the match to be strict of 8 bp on 5'-end of the read (restrictleft=7). You may have to try a few command options out to see what works best.
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