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Old 03-11-2011, 06:51 AM   #3
adeslat
Junior Member
 
Location: washington area

Join Date: Mar 2011
Posts: 7
Smile

Quote:
Originally Posted by Jon_Keats View Post
Check the sam header SO identifier. In the current release the sort nomenclature is not matching the SAM specification and will cause some applications the through errors. Either resort using picard, not samtools, or just use sed to modify the SO header to conform to specification
Jon,
Of all the people to reply -- thanks -- I've been reading your various how-tos -- they are simply wonderful. Thank you -- I will do as you suggest and report back -- picard works better?

Best,
Anne
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