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Old 04-27-2009, 12:21 PM   #4
Nils Homer
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Location: Boston, MA, USA

Join Date: Nov 2008
Posts: 1,285

Originally Posted by totalnew View Post
Thanks, nilshomer! I read Heng's paper about Maq, and paper for SOAP, PE part is kind of short, they wouldn't make me clearly understand how it works. Any other straightforward documentations?

There isn't too much to say about paired end alignment, just align them independently. PM if you want a draft of my own alignment paper.
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