It seems something is wrong with the compilation of the programs. After I recompile the programs using blimps following the instruction, most of the programs worked well (except choose_seqs_via_psiblastseedmedian).
However, the pre-compiled "fastaseqs" still gives "segmentation errors" occasionally. When I checked the compilation of "fastaseqs", it seems it is compiled using GNU 2.0.0, while my linux is GNU 2.10.0. There is no "fastaseqs" source code in the package. Is there any source code available for "fastaseqs"?
Cheers,
Jun
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